Extension of Porechop whose purpose is to process adapter sequences in ONT reads.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
fastq/fastq.gz file
*.{fastq,fastq.gz,fq,fq.gz}
custom_adapters
Text file containing custom adapters
*.fastq.gz
Adapter-trimmed fastq.gz file
log
*.log
Log file containing stdout information
versions_porechop_abi
${task.process}
:string
The name of the process
porechop_abi
The name of the tool
porechop_abi --version
:eval
The expression to obtain the version of the tool
versions
