Extension of Porechop whose purpose is to process adapter sequences in ONT reads.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
fastq/fastq.gz file
*.{fastq,fastq.gz,fq,fq.gz}
custom_adapters{:bash}
Text file containing custom adapters
*.fastq.gz{:bash}
Adapter-trimmed fastq.gz file
*.fastq.gz
log{:bash}
*.log{:bash}
Log file containing stdout information
*.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
