Extension of Porechop whose purpose is to process adapter sequences in ONT reads.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
fastq/fastq.gz file
*.{fastq,fastq.gz,fq,fq.gz}
custom_adapters:file
Text file containing custom adapters
reads
*.fastq.gz:file
Adapter-trimmed fastq.gz file
*.fastq.gz
log
*.log:file
Log file containing stdout information
*.log
versions
versions.yml:file
File containing software versions
versions.yml
