Adapter removal and demultiplexing of Oxford Nanopore reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads:file
fastq/fastq.gz file
*.{fastq,fastq.gz,fq,fq.gz}
reads
*.fastq.gz:file
Demultiplexed and/or adapter-trimmed fastq.gz file
*.{fastq.gz}
log
*.log:file
Log file containing stdout information
*.log
versions
versions.yml:file
File containing software versions
versions.yml
