modules/preseq_ccurve

Software for predicting library complexity and genome coverage in high-throughput sequencing

preseqlibrarycomplexity

https://github.com/nf-core/modules/[...]/modules/nf-core/preseq/ccurve

Description

Software for predicting library complexity and genome coverage in high-throughput sequencing

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`bam:file`

BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

name:type

description

pattern

`c_curve`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.c_curve.txt:file`

Preseq c_curve output file

*.{c_curve.txt}

`log`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.log:file`

Log file containing stderr produced by Preseq

*.{log}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

preseq
GPL

Software for predicting library complexity and genome coverage in high-throughput sequencing

http://smithlabresearch.org/software/preseq http://smithlabresearch.org/wp-content/uploads/manual.pdf https://github.com/smithlabcode/preseq

modules/preseq_ccurve

Description

Input

`meta:map`

`bam:file`

Output

`c_curve`

`meta:map`

`*.c_curve.txt:file`

`log`

`meta:map`

`*.log:file`

`versions`

`versions.yml:file`

Tools

preseq
GPL

included in

maintainers

get in touch

modules/preseq_ccurve

Description

Input

meta:map

bam:file

Output

c_curve

meta:map

*.c_curve.txt:file

log

meta:map

*.log:file

versions

versions.yml:file

Tools

preseq GPL

included in

maintainers

get in touch

`meta:map`

`bam:file`

`c_curve`

`meta:map`

`*.c_curve.txt:file`

`log`

`meta:map`

`*.log:file`

`versions`

`versions.yml:file`

preseq
GPL