Description

Software for predicting library complexity and genome coverage in high-throughput sequencing

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

lc_extrap (file)

File containing output of Preseq lcextrap

*.{lc_extrap.txt}

log (file)

Log file containing stderr produced by Preseq

*.{log}
included in
atacseq chipseq cutandrun methylseq nascent rnaseq
maintainers
Github user drpatelh
Github user edmundmiller
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

preseq
GPL

Software for predicting library complexity and genome coverage in high-throughput sequencing

http://smithlabresearch.org/software/preseq http://smithlabresearch.org/wp-content/uploads/manual.pdf https://github.com/smithlabcode/preseq