modules/preseq_lcextrap

Software for predicting library complexity and genome coverage in high-throughput sequencing

preseqlibrarycomplexity

https://github.com/nf-core/modules/[...]/modules/nf-core/preseq/lcextrap

Description

Software for predicting library complexity and genome coverage in high-throughput sequencing

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`bam:file`

BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

name:type

description

pattern

`lc_extrap`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.lc_extrap.txt:file`

File containing output of Preseq lcextrap

*.{lc_extrap.txt}

`log`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.log:file`

Log file containing stderr produced by Preseq

*.{log}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

preseq
GPL

Software for predicting library complexity and genome coverage in high-throughput sequencing

http://smithlabresearch.org/software/preseq http://smithlabresearch.org/wp-content/uploads/manual.pdf https://github.com/smithlabcode/preseq

modules/preseq_lcextrap

Description

Input

`meta:map`

`bam:file`

Output

`lc_extrap`

`meta:map`

`*.lc_extrap.txt:file`

`log`

`meta:map`

`*.log:file`

`versions`

`versions.yml:file`

Tools

preseq
GPL

included in

maintainers

get in touch

modules/preseq_lcextrap

Description

Input

meta:map

bam:file

Output

lc_extrap

meta:map

*.lc_extrap.txt:file

log

meta:map

*.log:file

versions

versions.yml:file

Tools

preseq GPL

included in

maintainers

get in touch

`meta:map`

`bam:file`

`lc_extrap`

`meta:map`

`*.lc_extrap.txt:file`

`log`

`meta:map`

`*.log:file`

`versions`

`versions.yml:file`

preseq
GPL