modules/president
Calculate pairwise nucleotide identity with respect to a reference sequence
fastagenomeqcnucleotides
Input
Name (Type)
Description
Pattern
One fasta file or a list of multiple fasta files to perform president on. Has to be uncompressed!
*.{fasta,fas,fa,fna,ffn,faa,mpfa,frn} Fasta of a reference genome. Has to be uncompressed!
*.{fasta,fas,fa,fna,ffn,faa,mpfa,frn} Output
Name (Type)
Description
Pattern
Fasta file containing sequences which passed the qc (“valid.fasta”). If true is set on the “compress” input value, the file is gz-compressed.
*.{fasta.gz, fasta} Fasta file containing sequences which didn’t pass the qc (“invalid.fasta”). If true is set on the “compress” input value, the files are gz-compressed.
*_invalid.{fasta.gz, fasta} Report with some information for every sample, like statistic values. See docs for details
*.tsv maintainers
