Description

Filter reads by quality score.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

reads:file

fastq file

*.{fastq}

Output

name:type
description
pattern

reads

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*_quality-pass.fastq:file

filtered fastq file

*.{fastq}

logs

*_command_log.txt:file

command logs

*.txt

versions

versions.yml:file

File containing software versions

versions.yml

log_tab

*.tab:file

parsed log table

*.tab

Tools

presto
AGPL v3

A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.