Description

Filter reads by quality score.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

reads

:file

fastq file

*.{fastq}

Output

name:type
description
pattern

reads

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*_quality-pass.fastq

:file

filtered fastq file

*.{fastq}

logs

*_command_log.txt

:file

command logs

*.txt

versions

versions.yml

:file

File containing software versions

versions.yml

log_tab

*.tab

:file

parsed log table

*.tab

Tools

presto
AGPL v3

A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.