A module to generate images from Pretext contact maps.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
pretext_map{:bash}
:file
pretext hic map
*.pretext
order_file{:bash}
Custom ordering of scaffolds in pretext snapshot output. This is a single column file of scaffold names
image{:bash}
*.{jpeg,png,bmp}{:bash}
image of a hic contact map
*.{jpeg,png,bmp}
versions_pretextsnapshot{:bash}
${task.process}{:bash}
:string
Name of the process
PretextSnapshot{:bash}
Name of the tool
PretextSnapshot --version | sed 's/^.*PretextSnapshot Version //g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
The name of the process
The name of the tool
Commandline image generator for Pretext Hi-C genome contact maps.
