Description

a module to generate images from Pretext contact maps.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

pretext_map (file)

pretext hic map

*.pretext

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

image (file)

image of a hic contact map

*.{png,jpg,bmp}
maintainer
Github user epaule
get in touch
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Tools

pretextsnapshot
https://github.com/wtsi-hpag/PretextSnapshot/blob/master/LICENSE

Commandline image generator for Pretext Hi-C genome contact maps.

github.com/wtsi-hpag/PretextSnapshot https://github.com/wtsi-hpag/PretextSnapshot