Description

a module to generate images from Pretext contact maps.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

pretext_map{:bash}

:file

pretext hic map

*.pretext

Output

name:type
description
pattern

image{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.{jpeg,png,bmp}{:bash}

:file

image of a hic contact map

*.{png,jpg,bmp}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

pretextsnapshot
https://github.com/wtsi-hpag/PretextSnapshot/blob/master/LICENSE

Commandline image generator for Pretext Hi-C genome contact maps.