A module to generate images from Pretext contact maps.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
pretext_map
:file
pretext hic map
*.pretext
order_file
Custom ordering of scaffolds in pretext snapshot output. This is a single column file of scaffold names
image
*.{jpeg,png,bmp}
image of a hic contact map
versions_pretextsnapshot
${task.process}
:string
Name of the process
PretextSnapshot
Name of the tool
PretextSnapshot --version | sed 's/^.*PretextSnapshot Version //g'
:eval
The expression to obtain the version of the tool
versions
The name of the process
The name of the tool
Commandline image generator for Pretext Hi-C genome contact maps.
