Description

a module to generate images from Pretext contact maps.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

pretext_map:file

pretext hic map

*.pretext

Output

name:type
description
pattern

image

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.{jpeg,png,bmp}:file

image of a hic contact map

*.{png,jpg,bmp}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

pretextsnapshot
https://github.com/wtsi-hpag/PretextSnapshot/blob/master/LICENSE

Commandline image generator for Pretext Hi-C genome contact maps.