Groovy Map containing data information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
adjacency:file
Adjacency matrix representing the graph connections (ie. 1 for edges, 0 otherwise).
This can be the adjacency matrix output from gene ratio approaches like propr/propd.
*.{csv,tsv}
meta2:map
Groovy Map containing data information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
gmt:file
A tab delimited file format that describes gene sets. The first column is the
concept id (eg. GO term, pathway, etc), the second column is the concept description, and the
rest are nodes (eg. genes) that is associated to the given concept.
*.{gmt}
Output
name:type
description
pattern
results
meta:file
Groovy Map containing sample information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
*.grea.tsv:file
Output file containing the information about the tested concepts (ie. gene sets)
and enrichment statistics.
