Description

Transform the data matrix using centered logratio transformation (CLR) or additive logratio transformation (ALR)

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing additional information. meta.id can be used to name the output files. [id: ‘test’, …]

count{:bash}

:file

Count matrix, where rows = variables or genes, columns = samples or cells. This matrix should not contain zeros. Otherwise, they will be first replaced by the minimum value. You may want to handle the zeros with a different method beforehand.

*.{csv,tsv}

Output

name:type
description
pattern

logratio{:bash}

meta{:bash}

:map

Groovy Map containing additional information. meta.id can be used to name the output files. [id: ‘test’, …]

*.logratio.tsv{:bash}

:file

ALR/CLR transformed data matrix. With rows = variables or genes, columns = samples or cells.

*.logratio.tsv

session_info{:bash}

meta{:bash}

:map

Groovy Map containing additional information. meta.id can be used to name the output files. [id: ‘test’, …]

*.R_sessionInfo.log{:bash}

:file

dump of R SessionInfo

*.R_sessionInfo.log

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

maintainers
Github user suzannejin
Github user oprana22
get in touch
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