Description

Perform differential proportionality analysis

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing additional information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]

count (file)

Count matrix, where rows = variables or genes, columns = samples or cells.
This matrix should not contain zeros. One should plug this module after another one that handles the zeros.

*.{csv,tsv}

meta2 (map)

Groovy map containing study-wide metadata related to the sample sheet and matrix

samplesheet (file)

CSV or TSV format sample sheet with sample metadata

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing additional information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]

propd (file)

R propd object

*.propd.rds

results (file)

Results table

*.propd.tsv

fdr (file)

(optional) propr fdr table

*.fdr.tsv

session_info (file)

dump of R SessionInfo

*.R_sessionInfo.log

versions (file)

File containing software versions

versions.yml