Groovy Map containing additional information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
count:file
Count matrix, where rows = variables or genes, columns = samples or cells.
This matrix should not contain zeros. One should plug this module after another one that handles the zeros.
*.{csv,tsv}
meta2:map
Groovy map containing study-wide metadata related to the sample sheet and matrix
samplesheet:file
CSV or TSV format sample sheet with sample metadata
Output
name:type
description
pattern
propd
meta:map
Groovy Map containing additional information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
*.propd.rds:file
R propd object
*.propd.rds
results
meta:map
Groovy Map containing additional information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
*.propd.tsv:file
Results table
*.propd.tsv
fdr
meta:map
Groovy Map containing additional information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
*.fdr.tsv:file
(optional) propd fdr table
*.fdr.tsv
adj
meta:map
Groovy Map containing additional information.
This can be used at the workflow level to pass optional parameters to the module.
[id: ‘test’, …]
