Description

Proteinortho is a tool to detect orthologous genes within different species.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test' ]

fasta_files (file)

Input fasta files (proteomes or transcriptomes), at least 2 are needed

*.{fa,fasta,faa,fna,fn}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

orthologgroups (file)

Orthology table

*.proteinortho.tsv

orthologgraph (file)

Orthology graph

*.proteinortho-graph

blastgraph (file)

BLAST graph

*.blast-graph
maintainer
Github user pmjklemm
get in touch
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