Description

Proteinortho is a tool to detect orthologous genes within different species.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test' ]

fasta_files{:bash}

:file

Input fasta files (proteomes or transcriptomes), at least 2 are needed

*.{fa,fasta,faa,fna,fn}

Output

name:type
description
pattern

orthologgroups{:bash}

meta{:bash}

:file

Orthology table

*.proteinortho.tsv

${meta.id}.proteinortho.tsv{:bash}

:file

Orthology table

*.proteinortho.tsv

orthologgraph{:bash}

meta{:bash}

:file

Orthology table

*.proteinortho.tsv

${meta.id}.proteinortho-graph{:bash}

:file

Orthology graph

*.proteinortho-graph

blastgraph{:bash}

meta{:bash}

:file

Orthology table

*.proteinortho.tsv

${meta.id}.blast-graph{:bash}

:file

BLAST graph

*.blast-graph

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

maintainer
Github user pmjklemm
get in touch
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