Description

Proteinortho is a tool to detect orthologous genes within different species.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

fasta_files:file

Input fasta files (proteomes or transcriptomes), at least 2 are needed

*.{fa,fasta,faa,fna,fn}

Output

name:type
description
pattern

orthologgroups

meta:file

Orthology table

*.proteinortho.tsv

${meta.id}.proteinortho.tsv:file

Orthology table

*.proteinortho.tsv

orthologgraph

meta:file

Orthology graph

*.proteinortho-graph

${meta.id}.proteinortho-graph:file

Orthology graph

*.proteinortho-graph

blastgraph

meta:file

BLAST graph

*.blast-graph

${meta.id}.blast-graph:file

BLAST graph

*.blast-graph

versions

versions.yml:file

File containing software versions

versions.yml