Calculate coverage cutoffs to determine when to purge duplicated sequence.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
stat{:bash}
:file
Histogram of coverage
*.stat
cutoff{:bash}
*.cutoffs{:bash}
Cutoff file
*.cutoffs
log{:bash}
*.calcuts.log{:bash}
Log file
.calcuts.log
versions_purgedups{:bash}
${task.process}{:bash}
:string
The name of the process
purge_dups{:bash}
The name of the tool
1.2.6{:bash}
The expression to obtain the version of the tool
versions{:bash}
Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth
