Calculate coverage cutoffs to determine when to purge duplicated sequence.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
stat{:bash}
:file
Histogram of coverage
*.stat
cutoff{:bash}
*.cutoffs{:bash}
Cutoff file
*.cutoffs
log{:bash}
*.calcuts.log{:bash}
Log file
.calcuts.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth
