Calculate coverage cutoffs to determine when to purge duplicated sequence.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
stat
:file
Histogram of coverage
*.stat
cutoff
*.cutoffs
Cutoff file
log
*.calcuts.log
Log file
.calcuts.log
versions_purgedups
${task.process}
:string
The name of the process
purge_dups
The name of the tool
1.2.6
The expression to obtain the version of the tool
versions
Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth
