Separates out sequences purged of falsely duplicated sequences.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
assembly
:file
Draft assembly in fasta format
*.fasta
bed
Bed file listing duplicated sequences, produced by PURGEDUPS_PURGEDUPS
*.bed
haplotigs
*.hap.fa
Fasta file containing purged haplotigs
purged
*.purged.fa
Fasta file purged of duplicated haplotigs
versions_purgedups
${task.process}
:string
The name of the process
purge_dups
The name of the tool
1.2.6
The expression to obtain the version of the tool
versions
Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth
