Description

Plots the read coverage from a purge dups statistics file and cutoffs.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

statfile (file)

A Purge dups statistic file

*.stat

cutoff (file)

A Purge dups cutoff file

*.cutoffs

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

png (file)

A png file of the read depth coverage.

*.png

Tools

purgedups
MIT

Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth