modules/purgedups_histplot

Plots the read coverage from a purge dups statistics file and cutoffs.

Read coverage histogramDuplication purgingRead depth

https://github.com/nf-core/modules/[...]/modules/nf-core/purgedups/histplot

Description

Plots the read coverage from a purge dups statistics file and cutoffs.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`statfile:file`

A Purge dups statistic file

*.stat

`cutoff:file`

A Purge dups cutoff file

*.cutoffs

Output

name:type

description

pattern

`png`

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.png:file`

A png file of the read depth coverage.

*.png

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

purgedups
MIT

Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth

github.com/dfguan/purge_dups 10.1093/bioinformatics/btaa025

modules/purgedups_histplot

Description

Input

`meta:map`

`statfile:file`

`cutoff:file`

Output

`png`

`meta:map`

`*.png:file`

`versions`

`versions.yml:file`

Tools

purgedups
MIT

maintainer

get in touch

modules/purgedups_histplot

Description

Input

meta:map

statfile:file

cutoff:file

Output

png

meta:map

*.png:file

versions

versions.yml:file

Tools

purgedups MIT

maintainer

get in touch

`meta:map`

`statfile:file`

`cutoff:file`

`png`

`meta:map`

`*.png:file`

`versions`

`versions.yml:file`

purgedups
MIT