modules/purgedups_histplot

Plots the read coverage from a purge dups statistics file and cutoffs.

Read coverage histogramDuplication purgingRead depth

https://github.com/nf-core/modules/[...]/modules/nf-core/purgedups/histplot

Description

Plots the read coverage from a purge dups statistics file and cutoffs.

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`statfile{:bash}`
`:file`

A Purge dups statistic file

*.stat

`cutoff{:bash}`
`:file`

A Purge dups cutoff file

*.cutoffs

Output

name:type

description

pattern

`png{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.png{:bash}`
`:file`

A png file of the read depth coverage.

*.png

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

purgedups
MIT

Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth

github.com/dfguan/purge_dups 10.1093/bioinformatics/btaa025

modules/purgedups_histplot

Description

Input

`meta{:bash}`
`:map`

`statfile{:bash}`
`:file`

`cutoff{:bash}`
`:file`

Output

`png{:bash}`

`meta{:bash}`
`:map`

`*.png{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

purgedups
MIT

maintainer

get in touch

modules/purgedups_histplot

Description

Input

meta{:bash}:map

statfile{:bash}:file

cutoff{:bash}:file

Output

png{:bash}

meta{:bash}:map

*.png{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

purgedups MIT

maintainer

get in touch

`meta{:bash}`
`:map`

`statfile{:bash}`
`:file`

`cutoff{:bash}`
`:file`

`png{:bash}`

`meta{:bash}`
`:map`

`*.png{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

purgedups
MIT