Description

Plots the read coverage from a purge dups statistics file and cutoffs.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

statfile{:bash}

:file

A Purge dups statistic file

*.stat

cutoff{:bash}

:file

A Purge dups cutoff file

*.cutoffs

Output

name:type
description
pattern

png{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.png{:bash}

:file

A png file of the read depth coverage.

*.png

versions_purgedups{:bash}

${task.process}{:bash}

:string

The name of the process

purge_dups{:bash}

:string

The name of the tool

1.2.6{:bash}

:string

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

purge_dups{:bash}

:string

The name of the tool

1.2.6{:bash}

:string

The expression to obtain the version of the tool

Tools

purgedups
MIT

Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth

github.com/dfguan/purge_dups 10.1093/bioinformatics/btaa025
maintainer
Github user mahesh-panchal
get in touch
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