Purge haplotigs and overlaps for an assembly
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
basecov:file
A file containing a histogram of base coverage. Obtained from PURGEDUPS_PBCSTAT
*.PB.base.cov
cutoff:file
A file containing duplication cutoff points. Obtained from PURGEDUPS_CALCUTS
*.cutoffs
paf:file
A file of assembly alignments to itself
*.paf(.gz)?
bed
*.dups.bed:file
A bed file of sequences purged of false duplications
*.bed
log
*.purge_dups.log:file
A log of the tool output
*.log
versions
versions.yml:file
File containing software versions
versions.yml
Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth
