Split fasta file by ‘N’s to aid in self alignment for duplicate purging
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
assembly{:bash}
:file
Draft assembly file
*.fasta
split_fasta{:bash}
*.split.fasta.gz{:bash}
Fasta split by N’s
*.fasta.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth
