modules/pycoqc

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qcquality controlsequencingnanopore

https://github.com/nf-core/modules/[...]/modules/nf-core/pycoqc

Description

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Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`summary`
`:file`

sequencing summary file

*.{txt}

Output

name:type

description

pattern

`html`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.html`
`:file`

Results in HTML format

`json`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.json`
`:file`

Results in JSON format

*.{json}

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

pycoqc
GNU General Public v3 (GPL v3)

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

github.com/tleonardi/pycoQC tleonardi.github.io/pycoQC https://github.com/tleonardi/pycoQC 10.21105/joss.01236

modules/pycoqc

Description

Input

`meta`
`:map`

`summary`
`:file`

Output

`html`

`meta`
`:map`

`*.html`
`:file`

`json`

`meta`
`:map`

`*.json`
`:file`

`versions`

`versions.yml`
`:file`

Tools

pycoqc
GNU General Public v3 (GPL v3)

included in

maintainers

get in touch

modules/pycoqc

Description

Input

meta:map

summary:file

Output

html

meta:map

*.html:file

json

meta:map

*.json:file

versions

versions.yml:file

Tools

pycoqc GNU General Public v3 (GPL v3)

included in

maintainers

get in touch

`meta`
`:map`

`summary`
`:file`

`html`

`meta`
`:map`

`*.html`
`:file`

`json`

`meta`
`:map`

`*.json`
`:file`

`versions`

`versions.yml`
`:file`

pycoqc
GNU General Public v3 (GPL v3)