Description

Damage parameter estimation for ancient DNA

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bam:file

BAM/CRAM/SAM file

*.{bam,cram,sam}

bai:file

BAM/CRAM/SAM index file

*.{bai,crai,sai}

Output

name:type
description
pattern

csv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

pydamage_results/*_pydamage_results.csv:file

PyDamage results as csv files

*.csv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

mag
Github user maxibor
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