Description

Damage parameter estimation for ancient DNA

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

bai (file)

BAM/CRAM/SAM index file

*.{bai,crai,sai}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

csv (file)

PyDamage results as csv files

*.csv
included in
mag
author
Github user maxibor
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

pydamage
GPL v3

Damage parameter estimation for ancient DNA

github.com/maxibor/pydamage pydamage.readthedocs.io https://github.com/maxibor/pydamage