modules/pydamage_filter

Damage parameter estimation for ancient DNA

ancient DNAaDNAde novo assemblyfilteringdamagedeaminationmiscoding lesionsC to Tpalaeogenomicsarchaeogenomicspalaeogeneticsarchaeogenetics

https://github.com/nf-core/modules/[...]/modules/nf-core/pydamage/filter

Description

Damage parameter estimation for ancient DNA

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`csv{:bash}`
`:file`

csv file from pydamage analyze

*.csv

Output

name:type

description

pattern

`csv{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`${prefix}_pydamage_filtered_results.csv{:bash}`
`:file`

PyDamage filtered results as csv file

*.csv

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

pydamage
GPL v3

Damage parameter estimation for ancient DNA

github.com/maxibor/pydamage pydamage.readthedocs.io https://github.com/maxibor/pydamage

modules/pydamage_filter

Description

Input

`meta{:bash}`
`:map`

`csv{:bash}`
`:file`

Output

`csv{:bash}`

`meta{:bash}`
`:map`

`${prefix}_pydamage_filtered_results.csv{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

pydamage
GPL v3

included in

maintainer

get in touch

modules/pydamage_filter

Description

Input

meta{:bash}:map

csv{:bash}:file

Output

csv{:bash}

meta{:bash}:map

${prefix}_pydamage_filtered_results.csv{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

pydamage GPL v3

included in

maintainer

get in touch

`meta{:bash}`
`:map`

`csv{:bash}`
`:file`

`csv{:bash}`

`meta{:bash}`
`:map`

`${prefix}_pydamage_filtered_results.csv{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

pydamage
GPL v3