Description

Damage parameter estimation for ancient DNA

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

csv

:file

csv file from pydamage analyze

*.csv

Output

name:type
description
pattern

csv

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}_pydamage_filtered_results.csv

:file

PyDamage filtered results as csv file

*.csv

versions_pydamage

${task.process}

:string

The name of the process

pydamage

:string

The name of the tool

NUMBA_CACHE_DIR=./tmp pydamage --version | sed -n 's/pydamage, version //p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

pydamage

:string

The name of the tool

NUMBA_CACHE_DIR=./tmp pydamage --version | sed -n 's/pydamage, version //p'

:eval

The expression to obtain the version of the tool

Tools

included in
mag
maintainer
Github user maxibor
get in touch
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