Description

Demultiplexer for Nanopore samples

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads{:bash}

:file

Non-demultiplexed fastq files

barcode_kit{:bash}

:string

Barcode kit used for demultiplexing

Output

name:type
description
pattern

reads{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fastq/*.fastq.gz{:bash}

:file

Demultiplexed fastq samples

*.fastq.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

qcat
MPL-2.0

A demultiplexer for Nanopore samples