Evaluate alignment data
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bacramm
BAM file
*.{bam}
gff
Feature file with regions of interest
*.{gff,gtf,bed}
fasta
Reference file of cram file
*.{fasta,fa,fna}
results
Qualimap results dir
*/*
versions
File containing software versions
versions.yml
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Interface and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
