Description

Evaluate alignment data

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bam:file

BAM file

*.{bam}

meta2:map

Groovy Map containing reference information e.g. [ id:‘test’ ]

gtf:file

GTF file of the reference genome

*.{gtf}

Output

name:type
description
pattern

results

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

${prefix}:directory

Qualimap results dir

*/*

versions

versions.yml:file

File containing software versions

versions.yml

Tools

qualimap
GPL-2.0-only

Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Interface and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.