Render a Quarto notebook, including parametrization.
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ].
[ id:'sample1', single_end:false ]
notebook:file
The Quarto notebook to be rendered.
*.{qmd}
parameters:map
Groovy map with notebook parameters which will be passed to Quarto to generate parametrized reports.
input_files:file
One or multiple files serving as input data for the notebook.
*
extensions:file
A quarto _extensions directory with custom template(s) to be available for rendering.
_extensions
html
*.html:file
HTML report generated by Quarto.
*.html
notebook
${notebook}:file
The original, un-rendered notebook.
*.[qmd,ipynb,rmd]
artifacts
artifacts/*:file
Artifacts generated during report rendering.
params_yaml
params.yml:file
Parameters used during report rendering.
extensions
_extensions:file
Quarto extensions used during report rendering.
versions
versions.yml:file
File containing software versions.
versions.yml
An open-source scientific and technical publishing system.
Parameterize, execute, and analyze notebooks
