Quality Assessment Tool for Genome Assemblies
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
consensus:file
Fasta file containing the assembly of interest
meta2:map
fasta:file
The genome assembly to be evaluated. Has to contain at least a non-empty string dummy value.
meta3:map
gff:file
The genome GFF file. Has to contain at least a non-empty string dummy value.
results
${prefix}:directory
Directory containing the results of the QUAST analysis
tsv
${prefix}.tsv:file
TSV file
${prefix}.tsv
transcriptome
meta:file
Report containing all the alignments of transcriptome to the assembly, only when a reference fasta is provided
${prefix}_transcriptome.tsv
${prefix}_transcriptome.tsv:file
misassemblies
Report containing misassemblies, only when a reference fasta is provided
${prefix}_misassemblies.tsv
${prefix}_misassemblies.tsv:file
unaligned
Report containing unaligned contigs, only when a reference fasta is provided
${prefix}_unaligned.tsv
${prefix}_unaligned.tsv:file
versions
versions.yml:file
File containing software versions
versions.yml
QUAST calculates quality metrics for genome assemblies
