Consensus module for raw de novo DNA assembly of long uncorrected reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads:file
List of input FastQ files. Racon expects single end reads
*.{fastq,fastq.gz,fq,fq.gz}
assembly:file
Genome assembly to be improved
*.{fasta,fa}
paf:file
Alignment in PAF format
*.paf
improved_assembly
*_assembly_consensus.fasta.gz:file
Improved genome assembly
*_assembly_consensus.fasta.gz
versions
versions.yml:file
File containing software versions
versions.yml
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
