Consensus module for raw de novo DNA assembly of long uncorrected reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files. Racon expects single end reads
*.{fastq,fastq.gz,fq,fq.gz}
assembly{:bash}
Genome assembly to be improved
*.{fasta,fa}
paf{:bash}
Alignment in PAF format
*.paf
improved_assembly{:bash}
*_assembly_consensus.fasta.gz{:bash}
Improved genome assembly
*_assembly_consensus.fasta.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
