Consensus module for raw de novo DNA assembly of long uncorrected reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input FastQ files. Racon expects single end reads
*.{fastq,fastq.gz,fq,fq.gz}
assembly
Genome assembly to be improved
*.{fasta,fa}
paf
Alignment in PAF format
*.paf
improved_assembly
*_assembly_consensus.fasta.gz
Improved genome assembly
versions_racon
${task.process}
:string
The name of the process
racon
The name of the tool
racon --version 2>&1 | sed "s/^.*v//"
:eval
The expression to obtain the version of the tool
versions
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
