Description

Randomly subsample sequencing reads to a specified coverage

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

List of input paired-end FastQ files

genome_size (string)

Genome size of the species

depth_cutoff (integer)

Depth of coverage cutoff

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

reads (file)

Reads with subsampled coverage

*.fastq.gz