Description

De novo genome assembler for long uncorrected reads.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, suffix:‘bacteria’ ]

reads (file)

Input file in FASTA/FASTQ format.

*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, suffix:‘bacteria’ ]

versions (file)

File containing software versions

versions.yml

fasta (file)

Assembled FASTA file

*.fasta.gz

gfa (file)

Repeat graph

*.gfa.gz