Description

De novo genome assembler for long uncorrected reads.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, suffix:‘bacteria’ ]

reads:file

Input file in FASTA/FASTQ format.

*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}

Output

name:type
description
pattern

fasta

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, suffix:‘bacteria’ ]

*.fasta.gz:file

Assembled FASTA file

*.fasta.gz

gfa

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, suffix:‘bacteria’ ]

*.gfa.gz:file

Repeat graph

*.gfa.gz

versions

versions.yml:file

File containing software versions

versions.yml