Description

RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.

Input

Name (Type)
Description
Pattern

alignment (file)

A FASTA format multiple sequence alignment file

*.{fasta,fas,fa,mfa}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

phylogeny (file)

A phylogeny in Newick format

*.{raxml.bestTree}

phylogeny_bootstrapped (file)

A phylogeny in Newick format with bootstrap values

*.{raxml.support}
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Tools

raxmlng
GPL v2-or-later

RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.

github.com/amkozlov/raxml-ng github.com/amkozlov/raxml-ng/wiki https://github.com/amkozlov/raxml-ng 10.1093/bioinformatics/btz305