modules/raxmlng

RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.

phylogenynewickmaximum likelihood

https://github.com/nf-core/modules/[...]/modules/nf-core/raxmlng

Description

RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.

Input

name:type

description

pattern

`alignment:file`

A FASTA format multiple sequence alignment file

*.{fasta,fas,fa,mfa}

Output

name:type

description

pattern

`phylogeny`

`*.raxml.bestTree:file`

A phylogeny in Newick format

*.{raxml.bestTree}

`phylogeny_bootstrapped`

`*.raxml.support:file`

A phylogeny in Newick format with bootstrap values

*.{raxml.support}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

raxmlng
GPL v2-or-later

RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.

github.com/amkozlov/raxml-ng github.com/amkozlov/raxml-ng/wiki https://github.com/amkozlov/raxml-ng 10.1093/bioinformatics/btz305

modules/raxmlng

Description

Input

`alignment:file`

Output

`phylogeny`

`*.raxml.bestTree:file`

`phylogeny_bootstrapped`

`*.raxml.support:file`

`versions`

`versions.yml:file`

Tools

raxmlng
GPL v2-or-later

maintainers

get in touch

modules/raxmlng

Description

Input

alignment:file

Output

phylogeny

*.raxml.bestTree:file

phylogeny_bootstrapped

*.raxml.support:file

versions

versions.yml:file

Tools

raxmlng GPL v2-or-later

maintainers

get in touch

`alignment:file`

`phylogeny`

`*.raxml.bestTree:file`

`phylogeny_bootstrapped`

`*.raxml.support:file`

`versions`

`versions.yml:file`

raxmlng
GPL v2-or-later