Description

Create a database for RepeatModeler

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

fasta (file)

Fasta file

*.{fasta,fsa,fa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

db (file)

Database files for repeatmodeler

`${prefix}.*`

versions (file)

File containing software versions

versions.yml
maintainer
Github user GallVp
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

repeatmodeler
Open Software License v2.1

RepeatModeler is a de-novo repeat family identification and modeling package.

github.com/Dfam-consortium/RepeatModeler