Description

Create a database for RepeatModeler

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

fasta{:bash}

:file

Fasta file

*.{fasta,fsa,fa}

Output

name:type
description
pattern

db{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

${prefix}.*{:bash}

:file

Database files for repeatmodeler

`${prefix}.*`

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

repeatmodeler
Open Software License v2.1

RepeatModeler is a de-novo repeat family identification and modeling package.