Description

Performs de novo transposable element (TE) family identification with RepeatModeler

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

db (file)

RepeatModeler database files generated with REPEATMODELER_BUILDDATABASE

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

fasta (file)

Consensus repeat sequences

*.fa

stk (file)

Seed alignments

*.stk

log (file)

A summarized log of the run

*.log

versions (file)

File containing software versions

versions.yml
maintainer
Github user GallVp
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Tools

repeatmodeler
Open Software License v2.1

RepeatModeler is a de-novo repeat family identification and modeling package.

github.com/Dfam-consortium/RepeatModeler