Description

Preprocess the CARD database for RGI to predict antibiotic resistance from protein or nucleotide data

Input

Name (Type)
Description
Pattern

card (directory)

Directory containing the CARD database

*/

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

db (directory)

Directory containing the processed CARD database files

*/

tool_version (string)

The version of the tool in string format (useful for downstream tools such as hAMRronization)

db_version (string)

The version of the used database in string format (useful for downstream tools such as hAMRronization)

Tools

rgi
https://card.mcmaster.ca/about

This module preprocesses the downloaded Comprehensive Antibiotic Resistance Database (CARD) which can then be used as input for RGI.