Markup VCF file using rho-calls.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
vcf file
*.{vcf,vcf.gz}
tbi
vcf index file
*.{tbi}
meta2
roh
Bcftools roh style TSV file with CHR,POS,AZ,QUAL
*.{roh}
bed
BED file with AZ windows.
*.{bed}
*_rhocall.vcf
versions_rhocall
${task.process}
:string
The name of the process
rhocall
The name of the tool
rhocall --version | sed 's/rhocall, version //'
:eval
The expression to obtain the version of the tool
versions
Call regions of homozygosity and make tentative UPD calls.
