Markup VCF file using rho-calls.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf:file
vcf file
*.{vcf,vcf.gz}
tbi:file
vcf index file
*.{tbi}
meta2:map
roh:file
Bcftools roh style TSV file with CHR,POS,AZ,QUAL
*.{roh}
bed:file
BED file with AZ windows.
*.{bed}
vcf
*_rhocall.vcf:file
versions
versions.yml:file
File containing software versions
versions.yml
Call regions of homozygosity and make tentative UPD calls.
