Markup VCF file using rho-calls.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
vcf file
*.{vcf,vcf.gz}
tbi{:bash}
vcf index file
*.{tbi}
meta2{:bash}
roh{:bash}
Bcftools roh style TSV file with CHR,POS,AZ,QUAL
*.{roh}
bed{:bash}
BED file with AZ windows.
*.{bed}
*_rhocall.vcf{:bash}
versions_rhocall{:bash}
${task.process}{:bash}
:string
The name of the process
rhocall{:bash}
The name of the tool
rhocall --version | sed 's/rhocall, version //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Call regions of homozygosity and make tentative UPD calls.
