Markup VCF file using rho-calls.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
meta2
vcf
vcf file
*.{vcf,vcf.gz}
tbi
vcf index file
*.{tbi}
roh
Bcftools roh style TSV file with CHR,POS,AZ,QUAL
*.{roh}
bed
BED file with AZ windows.
*.{bed}
versions
File containing software versions
versions.yml
Call regions of homozygosity and make tentative UPD calls.