Description

Markup VCF file using rho-calls.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

meta2 (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

vcf file

*.{vcf,vcf.gz}

tbi (file)

vcf index file

*.{tbi}

roh (file)

Bcftools roh style TSV file with CHR,POS,AZ,QUAL

*.{roh}

bed (file)

BED file with AZ windows.

*.{bed}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

vcf file

*.{vcf,vcf.gz}

versions (file)

File containing software versions

versions.yml
included in
raredisease
author
Github user ramprasadn
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Tools

rhocall
GPL v3

Call regions of homozygosity and make tentative UPD calls.

github.com/dnil/rhocall https://github.com/dnil