Call regions of homozygosity and make tentative UPD calls
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
vcf
:file
VCF file
*.{vcf}
meta2
roh
Input RHO file produced from rhocall
*.{roh}
bed
${prefix}/${prefix}.bed
Bed file containing roh calls
*.{bed}
wig
${prefix}/${prefix}.wig
Wig file containing roh calls
*.{wig}
versions_rhocall
${task.process}
:string
The name of the process
rhocall
The name of the tool
rhocall --version | sed 's/rhocall, version //'
:eval
The expression to obtain the version of the tool
versions
Call regions of homozygosity and make tentative UPD calls.
