Call regions of homozygosity and make tentative UPD calls
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
vcf{:bash}
:file
VCF file
*.{vcf}
meta2{:bash}
roh{:bash}
Input RHO file produced from rhocall
*.{roh}
bed{:bash}
${prefix}/${prefix}.bed{:bash}
Bed file containing roh calls
*.{bed}
wig{:bash}
${prefix}/${prefix}.wig{:bash}
Wig file containing roh calls
*.{wig}
versions_rhocall{:bash}
${task.process}{:bash}
:string
The name of the process
rhocall{:bash}
The name of the tool
rhocall --version | sed 's/rhocall, version //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Call regions of homozygosity and make tentative UPD calls.
