Quality control of riboseq bam data
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
bam:file
Sorted BAM/CRAM/SAM file
*.{bam}
bai:file
Index for sorted BAM/CRAM/SAM file
*.{bai}
meta2:map
Groovy Map containing reference information e.g. [ id:'Ensembl human v.111' ]
[ id:'Ensembl human v.111' ]
gtf:file
GTF-format annotation file for reference sequences used in the bam file
*.gtf
distribution
*.txt:file
file containing distribution
*.{txt}
pdf
*.pdf:file
Pdf figure file is plot of all the distributions and illustration of quality and P-site offset
*.{pdf}
offset
*.para.py:file
This file saves P-site offsets for different reads lengths in python code dict format, and can be used in further analysis
*.{para.py}
versions
versions.yml:file
File containing software versions
versions.yml
Ribo TIS Hunter (Ribo-TISH) identifies translation activities using ribosome profiling data.
