Quality control of riboseq bam data
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
bam{:bash}
:file
Sorted BAM/CRAM/SAM file
*.{bam}
bai{:bash}
Index for sorted BAM/CRAM/SAM file
*.{bai}
meta2{:bash}
Groovy Map containing reference information e.g. [ id:'Ensembl human v.111' ]
[ id:'Ensembl human v.111' ]
gtf{:bash}
GTF-format annotation file for reference sequences used in the bam file
*.gtf
distribution{:bash}
*.txt{:bash}
file containing distribution
*.{txt}
pdf{:bash}
*.pdf{:bash}
Pdf figure file is plot of all the distributions and illustration of quality and P-site offset
*.{pdf}
offset{:bash}
*.para.py{:bash}
This file saves P-site offsets for different reads lengths in python code dict format, and can be used in further analysis
*.{para.py}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Ribo TIS Hunter (Ribo-TISH) identifies translation activities using ribosome profiling data.
