Description

Accurate detection of short and long active ORFs using Ribo-seq data

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:'Ensembl human v.111' ]

fasta (file)

Fasta-format sequence file for reference sequences used in the bam file

*.gtf

gtf (file)

GTF-format annotation file for reference sequences used in the bam file

*.gtf

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:'Ensembl human v.111' ]

candidate_orfs (file)

TSV file with candidate ORFs

*.tsv

versions (file)

File containing software versions

versions.yml

Tools

ribotricer
GNU General Public v3 (GPL v3)

Python package to detect translating ORF from Ribo-seq data