Description

Accurate detection of short and long active ORFs using Ribo-seq data

Input

name:type
description
pattern

meta:map

Groovy Map containing reference information e.g. [ id:'Ensembl human v.111' ]

fasta:file

Fasta-format sequence file for reference sequences used in the bam file

*.gtf

gtf:file

GTF-format annotation file for reference sequences used in the bam file

*.gtf

Output

name:type
description
pattern

candidate_orfs

meta:map

Groovy Map containing reference information e.g. [ id:'Ensembl human v.111' ]

*_candidate_orfs.tsv:file

TSV file with candidate ORFs

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

ribotricer
GNU General Public v3 (GPL v3)

Python package to detect translating ORF from Ribo-seq data