Accurate detection of short and long active ORFs using Ribo-seq data
meta
:map
Groovy Map containing reference information e.g. [ id:'Ensembl human v.111' ]
[ id:'Ensembl human v.111' ]
fasta
:file
Fasta-format sequence file for reference sequences used in the bam file
*.gtf
gtf
GTF-format annotation file for reference sequences used in the bam file
candidate_orfs
*_candidate_orfs.tsv
TSV file with candidate ORFs
*.tsv
versions_ribotricer
${task.process}
:string
The name of the process
ribotricer
The name of the tool
ribotricer --version 2>&1 | sed -n 's/^ribotricer, version //p'
:eval
The expression to obtain the version of the tool
versions
Python package to detect translating ORF from Ribo-seq data
