Accurate detection of short and long active ORFs using Ribo-seq data
meta{:bash}
:map
Groovy Map containing reference information e.g. [ id:'Ensembl human v.111' ]
[ id:'Ensembl human v.111' ]
fasta{:bash}
:file
Fasta-format sequence file for reference sequences used in the bam file
*.gtf
gtf{:bash}
GTF-format annotation file for reference sequences used in the bam file
candidate_orfs{:bash}
*_candidate_orfs.tsv{:bash}
TSV file with candidate ORFs
*.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Python package to detect translating ORF from Ribo-seq data
