Render an rmarkdown notebook. Supports parametrization.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
notebook{:bash}
:file
Rmarkdown file
*.{Rmd}
parameters{:bash}
Groovy map with notebook parameters which will be passed to rmarkdown to generate parametrized reports.
input_files{:bash}
One or multiple files serving as input data for the notebook.
*
report{:bash}
*.html{:bash}
HTML report generated from Rmarkdown
*.html
parameterised_notebook{:bash}
*.parameterised.Rmd{:bash}
Parameterised Rmarkdown file
*.parameterised.Rmd
artifacts{:bash}
artifacts/*{:bash}
Artifacts generated by the notebook
artifacts/*
session_info{:bash}
session_info.log{:bash}
dump of R SessionInfo
*.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Dynamic Documents for R
