Render an rmarkdown notebook. Supports parametrization.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
notebook
Rmarkdown file
*.{Rmd}
parameters
Groovy map with notebook parameters which will be passed to rmarkdown to generate parametrized reports.
input_files
One or multiple files serving as input data for the notebook.
*
report
HTML report generated from Rmarkdown
*.html
session_info
dump of R SessionInfo
*.log
versions
File containing software versions
versions.yml
Dynamic Documents for R