Render an rmarkdown notebook. Supports parametrization.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
notebook:file
Rmarkdown file
*.{Rmd}
parameters:map
Groovy map with notebook parameters which will be passed to rmarkdown to generate parametrized reports.
input_files:file
One or multiple files serving as input data for the notebook.
*
report
*.html:file
HTML report generated from Rmarkdown
*.html
parameterised_notebook
*.parameterised.Rmd:file
Parameterised Rmarkdown file
*.parameterised.Rmd
artifacts
artifacts/*:file
Artifacts generated by the notebook
artifacts/*
session_info
session_info.log:file
dump of R SessionInfo
*.log
versions
versions.yml:file
File containing software versions
versions.yml
Dynamic Documents for R
