Render an rmarkdown notebook. Supports parametrization.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
notebook
:file
Rmarkdown file
*.{Rmd}
parameters
Groovy map with notebook parameters which will be passed to rmarkdown to generate parametrized reports.
input_files
One or multiple files serving as input data for the notebook.
*
report
*.html
HTML report generated from Rmarkdown
parameterised_notebook
*.parameterised.Rmd
Parameterised Rmarkdown file
artifacts
artifacts/*
Artifacts generated by the notebook
session_info
session_info.log
dump of R SessionInfo
*.log
versions_rmarkdownnotebook
${task.process}
:string
The process the versions were collected from
rmarkdownnotebook
Name of the tool
Rscript -e "cat(paste(packageVersion('rmarkdown'), collapse='.'))"
:eval
The expression to obtain the version of the tool
versions
Dynamic Documents for R
