Calculate pan-genome from annotated bacterial assemblies in GFF3 format
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gff
A set of GFF3 formatted files
*.{gff}
versions
File containing software versions
versions.yml
results
Directory containing Roary result files
*/*
aln
Core-genome alignment produced by Roary (Optional)
*.{aln}
Rapid large-scale prokaryote pan genome analysis
