Calculate pan-genome from annotated bacterial assemblies in GFF3 format
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gff:file
A set of GFF3 formatted files
*.{gff}
results
results/*:directory
Directory containing Roary result files
*/*
aln
results/*.aln:file
Core-genome alignment produced by Roary (Optional)
*.{aln}
versions
versions.yml:file
File containing software versions
versions.yml
Rapid large-scale prokaryote pan genome analysis
