modules/rrnatranscripts

Ribosomal RNA extraction from a GTF file.

ribosomalrnagenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/rrnatranscripts

Description

Ribosomal RNA extraction from a GTF file.

Input

name:type

description

pattern

`gtf:file`

GTF file

*.{gtf}

Output

name:type

description

pattern

`rrna_gtf`

`*rrna_intervals.gtf:file`

GTF file with ribosomal RNA only

*.{gtf}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

rrnatranscripts
GPL-3.0-or-later

Extraction of ribosomal RNA

github.com/nf-core/rnafusion