Description

Ribosomal RNA extraction from a GTF file.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

gtf:file

GTF file

*.{gtf}

Output

name:type
description
pattern

rrna_gtf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*_rrna_intervals.gtf:file

Output GTF file containing ribosomal RNA intervals

*_rrna_intervals.gtf

versions

versions.yml:file

File containing software versions

versions.yml

Tools

rrnatranscripts
GPL-3.0-or-later

Extraction of ribosomal RNA