Calculate expression with RSEM
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Input reads for quantification
*.fastq.gz
index
RSEM index
rsem/*
counts_gene
Expression counts on gene level
*.genes.results
counts_transctips
Expression counts on transcript level
*.isoforms.results
stat
RSEM statistics
*.stat
logs
RSEM logs
*.log
versions
File containing software versions
versions.yml
bam_star
BAM file generated by STAR (optional)
*.STAR.genome.bam
bam_genome
Genome BAM file (optional)
*.genome.bam
bam_transcript
Transcript BAM file (optional)
*.transcript.bam
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
