Prepare a reference genome for RSEM
fasta
:file
The Fasta file of the reference genome
*.{fasta,fa}
gtf
The GTF file of the reference genome
*.gtf
index
rsem
:directory
RSEM index directory
transcript_fasta
*transcripts.fa
Fasta file of transcripts
rsem/*transcripts.fa
versions_rsem
${task.process}
:string
The process the versions were collected from
The tool name
rsem-calculate-expression --version | sed -e "s/Current version: RSEM v//g"
:eval
The expression to obtain the version of the tool
versions_star
star
STAR --version | sed -e "s/STAR_//g"
versions
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
