Prepare a reference genome for RSEM
fasta:file
The Fasta file of the reference genome
*.{fasta,fa}
gtf:file
The GTF file of the reference genome
*.gtf
index
rsem:directory
RSEM index directory
rsem
transcript_fasta
*transcripts.fa:file
Fasta file of transcripts
rsem/*transcripts.fa
versions
versions.yml:file
File containing software versions
versions.yml
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
