Prepare a reference genome for RSEM
fasta{:bash}
:file
The Fasta file of the reference genome
*.{fasta,fa}
gtf{:bash}
The GTF file of the reference genome
*.gtf
index{:bash}
rsem{:bash}
:directory
RSEM index directory
rsem
transcript_fasta{:bash}
*transcripts.fa{:bash}
Fasta file of transcripts
rsem/*transcripts.fa
versions_rsem{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
The tool name
rsem-calculate-expression --version | sed -e "s/Current version: RSEM v//g"{:bash}
:eval
The expression to obtain the version of the tool
versions_star{:bash}
star{:bash}
STAR --version | sed -e "s/STAR_//g"{:bash}
versions{:bash}
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
