Prepare a reference genome for RSEM
fasta{:bash}
:file
The Fasta file of the reference genome
*.{fasta,fa}
gtf{:bash}
The GTF file of the reference genome
*.gtf
index{:bash}
rsem{:bash}
:directory
RSEM index directory
rsem
transcript_fasta{:bash}
*transcripts.fa{:bash}
Fasta file of transcripts
rsem/*transcripts.fa
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
