Generate statistics from a bam file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
the bam file to calculate statistics of
*.{bam}
bai
BAM index file
*.{bai}
txt
bam statistics report
*.bam_stat.txt
versions_rseqc
${task.process}
:string
The process the versions were collected from
rseqc
The tool name
bam_stat.py --version | sed "s/bam_stat.py //"
:eval
The expression to obtain the version of the tool
versions
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
