Generate statistics from a bam file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
the bam file to calculate statistics of
*.{bam}
bai{:bash}
BAM index file
*.{bai}
txt{:bash}
bam statistics report
*.bam_stat.txt
*.bam_stat.txt{:bash}
versions_rseqc{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
rseqc{:bash}
The tool name
bam_stat.py --version | sed "s/bam_stat.py //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
