Infer strandedness from sequencing reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
the bam file to calculate statistics of
*.{bam}
bai
BAM index file
*.{bai}
bed
a bed file for the reference gene model
*.{bed}
txt
infer_experiment results report
*.infer_experiment.txt
versions_rseqc
${task.process}
:string
The name of the process
rseqc
The name of the tool
infer_experiment.py --version | sed "s/infer_experiment.py //"
:eval
The expression to obtain the version of the tool
versions
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
