Infer strandedness from sequencing reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
the bam file to calculate statistics of
*.{bam}
bai{:bash}
BAM index file
*.{bai}
bed{:bash}
a bed file for the reference gene model
*.{bed}
txt{:bash}
infer_experiment results report
*.infer_experiment.txt
*.infer_experiment.txt{:bash}
versions_rseqc{:bash}
${task.process}{:bash}
:string
The name of the process
rseqc{:bash}
The name of the tool
infer_experiment.py --version | sed "s/infer_experiment.py //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
