Calculate inner distance between read pairs.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
the alignment in bam format
*.{bam}
bai
BAM index file
*.{bai}
bed
a bed file for the reference gene model
*.{bed}
distance
the inner distances
*.inner_distance.txt
*distance.txt
freq
*freq.txt
frequencies of different insert sizes
*.inner_distance_freq.txt
mean
*mean.txt
mean/median values of inner distances
*.inner_distance_mean.txt
pdf
*.pdf
distribution plot of inner distances
*.inner_distance_plot.pdf
rscript
*.r
script to reproduce the plot
*.inner_distance_plot.R
versions_rseqc
${task.process}
:string
The process the versions were collected from
rseqc
The tool name
inner_distance.py --version | sed "s/inner_distance.py //"
:eval
The expression to obtain the version of the tool
versions
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
