compare detected splice junctions to reference gene model
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
bam
the alignment in bam format
*.{bam}
bed
a bed file for the reference gene model
*.{bed}
bed file of annotated junctions
*.junction.bed
interact_bed
Interact bed file
*.Interact.bed
xls
xls file with junction information
*.xls
pdf
junction plot
*.junction.pdf
events_pdf
events plot
*.events.pdf
rscript
Rscript to reproduce the plots
*.r
log
Log file of execution
*.junction_annotation.log
versions
File containing software versions
versions.yml
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
