compare detected splice junctions to reference gene model
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
the alignment in bam format
*.{bam}
bed:file
a bed file for the reference gene model
*.{bed}
xls
meta:file
xls file with junction information
*.xls
*.xls:file
rscript
*.r:file
Rscript to reproduce the plots
*.r
log
*.log:file
Log file of execution
*.junction_annotation.log
bed
*.junction.bed:file
bed file of annotated junctions
*.junction.bed
interact_bed
*.Interact.bed:file
Interact bed file
*.Interact.bed
pdf
*junction.pdf:file
junction plot
*.junction.pdf
events_pdf
*events.pdf:file
events plot
*.events.pdf
versions
versions.yml:file
File containing software versions
versions.yml
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
